PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30606_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 299aa    MW: 33730.9 Da    PI: 8.3158
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30606_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.4e-171461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEd +lv +++q+G+g+W++++    ++R+ k+c++rw +yl
  Cotton_A_30606_BGI-A2_v1.0 14 KGPWTPEEDIILVSYIQQHGPGNWRAVPTNTALHRCSKSCRLRWTNYL 61
                                79********************************************97 PP

2Myb_DNA-binding50.45e-1667112148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg++T  E++l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Cotton_A_30606_BGI-A2_v1.0  67 RGNFTDHEEKLIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                                 89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.294965IPR017930Myb domain
SuperFamilySSF466899.38E-3111108IPR009057Homeodomain-like
SMARTSM007171.2E-141363IPR001005SANT/Myb domain
PfamPF002494.8E-151461IPR001005SANT/Myb domain
CDDcd001672.27E-101661No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2465117IPR009057Homeodomain-like
SMARTSM007171.9E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.75466116IPR017930Myb domain
PfamPF002491.9E-1467112IPR001005SANT/Myb domain
CDDcd001671.86E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGRPPCCDKA GLKKGPWTPE EDIILVSYIQ QHGPGNWRAV PTNTALHRCS KSCRLRWTNY  60
LRPGIKRGNF TDHEEKLIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKTIN  120
GSESYSREGF SSEKHQISRG QWERKLQTDI QMAKQALADA LSPEKSSGLA SKPRGYASST  180
ENIAKLLKKW MRNPPKPVSS DNMGGIGTPW KEHKSSNSIE MSEVFESLEV FESFDSSNSD  240
FSQSLSPDQA SLFQDESKPD VNELGQLTLL EKWLFDDGAS QGKDDQLSDI KLDGNAIFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLKT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483622.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-110MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0D2SQT60.0A0A0D2SQT6_G
STRINGVIT_14s0108g00830.t011e-130(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58422348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-103myb domain protein 30